LICENSE
NOTICE
README.md
pyproject.toml
setup.py
abmptools/__init__.py
abmptools/abinit_io.py
abmptools/addsolvfrag.py
abmptools/ajf2config.py
abmptools/ajfserial.py
abmptools/anlfmo.py
abmptools/convertcpf.py
abmptools/cpf2ifielist.py
abmptools/cpfmanager.py
abmptools/generate_difie.py
abmptools/generateajf.py
abmptools/getcharge.py
abmptools/getifiepieda.py
abmptools/log2config.py
abmptools/log2cpf.py
abmptools/logmanager.py
abmptools/mol_io.py
abmptools/molcalc.py
abmptools/pdb2fmo.py
abmptools/pdb_io.py
abmptools/pdbmodify.py
abmptools/readcif.py
abmptools/setfmo.py
abmptools/udf2fmo.py
abmptools/udf_io.py
abmptools/udfcreate.py
abmptools/udfcreate_v2.py
abmptools/udfrm_io.py
abmptools.egg-info/PKG-INFO
abmptools.egg-info/SOURCES.txt
abmptools.egg-info/dependency_links.txt
abmptools.egg-info/entry_points.txt
abmptools.egg-info/requires.txt
abmptools.egg-info/top_level.txt
abmptools/amorphous/__init__.py
abmptools/amorphous/__main__.py
abmptools/amorphous/builder.py
abmptools/amorphous/cli.py
abmptools/amorphous/density.py
abmptools/amorphous/mdp_protocol.py
abmptools/amorphous/models.py
abmptools/amorphous/molecule_prep.py
abmptools/amorphous/ndx_writer.py
abmptools/amorphous/packing.py
abmptools/amorphous/parameterizer.py
abmptools/amorphous/pubchem.py
abmptools/amorphous/system_model_adapter.py
abmptools/amorphous/trajectory_ingest.py
abmptools/core/__init__.py
abmptools/core/_subprocess.py
abmptools/core/acpype.py
abmptools/core/system_model.py
abmptools/f90/bin/readifiepiedalib.so
abmptools/geomopt/__init__.py
abmptools/geomopt/mace_optimizer.py
abmptools/geomopt/openff_openmm_minimizer.py
abmptools/geomopt/pyscf_optimizer.py
abmptools/gro2udf/__init__.py
abmptools/gro2udf/__main__.py
abmptools/gro2udf/cli.py
abmptools/gro2udf/default_template.udf
abmptools/gro2udf/default_template_cognac101.udf
abmptools/gro2udf/exporter.py
abmptools/gro2udf/gro_adapter.py
abmptools/gro2udf/gro_parser.py
abmptools/gro2udf/mdp_parser.py
abmptools/gro2udf/top_adapter.py
abmptools/gro2udf/top_exporter.py
abmptools/gro2udf/top_model.py
abmptools/gro2udf/top_parser.py
abmptools/gro2udf/trajectory_io.py
abmptools/gro2udf/udf_writer.py
abmptools/trajectory/__init__.py
abmptools/trajectory/__main__.py
abmptools/trajectory/cli.py
abmptools/trajectory/postprocess.py
abmptools/udf2gro/__init__.py
abmptools/udf2gro/__main__.py
abmptools/udf2gro/cli.py
abmptools/udf2gro/exporter.py
abmptools/udf2gro/udf_adapter.py
abmptools/udf2gro/gromacs/__init__.py
abmptools/udf2gro/gromacs/writers/__init__.py
abmptools/udf2gro/gromacs/writers/_validator.py
abmptools/udf2gro/gromacs/writers/gro_writer.py
abmptools/udf2gro/gromacs/writers/itp_writer.py
abmptools/udf2gro/gromacs/writers/mdp_writer.py
abmptools/udf2gro/gromacs/writers/top_writer.py
abmptools/udfcharge/__init__.py
abmptools/udfcharge/__main__.py
abmptools/udfcharge/core.py
tests/test_abinit_io.py
tests/test_amorphous_models.py
tests/test_amorphous_molecule_prep.py
tests/test_anlfmo.py
tests/test_builder_integration.py
tests/test_builder_mocked.py
tests/test_charge_method.py
tests/test_cli_scripts.py
tests/test_cpfmanager.py
tests/test_density.py
tests/test_getifiepieda.py
tests/test_gro_adapter.py
tests/test_gro_parser.py
tests/test_gro_writer.py
tests/test_interchange_adapter.py
tests/test_logmanager.py
tests/test_mdp_parser.py
tests/test_mdp_protocol.py
tests/test_mdp_writer.py
tests/test_mol_io.py
tests/test_molcalc.py
tests/test_ndx_writer.py
tests/test_parameterizer.py
tests/test_pdb_io.py
tests/test_pubchem.py
tests/test_pyscf_optimizer.py
tests/test_pyscf_parsers.py
tests/test_read_ifie_hf_fallback.py
tests/test_readcif.py
tests/test_regression.py
tests/test_setfmo.py
tests/test_system_model.py
tests/test_system_model_extensions.py
tests/test_top_exporter_frames_override.py
tests/test_top_exporter_pressure_dc.py
tests/test_top_model.py
tests/test_top_parser.py
tests/test_top_writer.py
tests/test_trajectory_ingest.py
tests/test_trajectory_postprocess.py
tests/test_udf_io.py
tests/test_udfcreate.py
tests/test_udfcreate_v2.py
tests/test_udfcreate_v2_byte_equivalence.py
tests/test_udfrm_io.py